Applications & Solutions - Genomics - Automated NGS library preparation

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Our NGS library prep solutions are designed to enable your needs and accelerate your science.

Leave library prep to us, save time for what matters more.

Validation and verification-ready Tecan’s reagents and 3rd party’s kits to develop automated NGS library prep protocols to ensure excellent performance in any lab.

Reliable and reproducible NGS library prep

From plug-and-play to high to highly flexible automated solutions. Now you can walk-away with confidence.

All in one solution with proven technology and expertise.

From reagents, automation, and consumables to application expertise – we support you every step of the way.

Product Features

From low to high throughput, turnkey solutions to OEM development, our comprehensive NGS library prep solutions allow scientists to save time on library prep and focus on what matters most.

Tecan’s Reagents

• Applicable for a broad range of sample types
• Inputs as low as 10 pg for DNA-Seq and RNA-Seq

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MagicPrep® NGS

• 8 samples per run
• Plug & Play
• Used with Tecan’s NGS reagents (DNA and mRNA-seq)

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DreamPrep® NGS Compact

• Up to 48 samples per run
• Benchtop solution
• Open platform compatible with several NGS protocols

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DreamPrep® NGS

• Up to 96 samples per run
• High capacity
• Open platform compatible with several NGS protocols

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Custom Systems for OEM Partners

• Designed to your requirements and your regulatory needs
• Optimized for reagent kits of OEM Partner

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Collaborating to Advance Genomics

We continually strive to offer innovative, accessible and always reliable solutions.

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DreamPrep NGS and DreamPrep NGS Compact

Walkaway automation solutions for NGS library prep

Flexible configurations to deliver consistent, sequencing-ready libraries for a wide range of NGS protocols with minimal manual intervention that match your different throughput requirements.

Both solutions capitalize on the state-of-the-art Fluent^® automation workstation, delivering extraordinary precision, unmatched efficiency, and seamless integration across diverse throughputs.

DreamPrep NGS

DreamPrep™ NGS

High throughputs (up to 384 samples/day¹)
52 deck positions
Plate reader and ODTC are included for long walk-away times and full NGS workflows

Output

96 DNA libraries per run in less than 4h with Tecan NGS kit Celero™
96 RNA libraries per run in 9h with Tecan NGS kit Universal Plus™ mRNA
Targeted DNA genotyping

384 samples per day with Tecan NGS kit Allegro®
384 samples per day with Tecan NGS Protocol combining Tecan NGS kit Celero and QIAseq SARS-CoV-2 Primer Panel

Software packages included

Touchtools™: Intuitive interaction with the platform
Introspect™: Performance data analysis
FluentControl™: Overall system management

DreamPrep NGS Compact

DreamPrep™ NGS Compact

Low-medium throughputs (8-48 samples/day¹)
Smaller footprint, 30 deck positions
Three flexible configurations to cover distinct customer requirements

Three configurations are available and upgradable at any time

Basic: Increase your productivity as all liquid transfers and incubations are covered by the platform

Mid: Extend your walk-away time and perform amplification steps by simply adding the ODTC

Full: Integrate Quantification and Normalizations steps in your NGS workflows by including the Infinite® 200 Pro Reader F Nano+

Software packages included

Touchtools™: Intuitive interaction with the platform
Introspect™: Performance data analysis
FluentControl™: Overall system management

Open and flexible platform

All components² provide high performance across different library preparation kits

Fast QC and normalization without sample loss

Enabled by the integrated plate reader and NuQuant®³ technology

Optimal performance with Tecan NGS reagents

For faster and more efficient workflows

Fast processing speed

Parallel movement of robotic arms increases productivity

Intuitive interaction with a touchscreen

User-friendly interface empowers your daily operations

Walk-away time solutions

On-deck thermal cycler enables longer walk-away times

Scale up your NGS workflows with DreamPrep NGS solutions

These platforms combine the advanced technology of the Fluent® automation workstation, Infinite® 200 Pro Reader F Nano+ and Tecan NGS library preparation kits to generate sequencing-ready NGS libraries in one simple automated workflow.

MagicPrep NGS
NGS library prep at the press of a button

Looking for lower throughputs? MagicPrep NGS is a new instrument that provides push button simplicity for NGS library preparation compatible with Illumina sequencing platforms.

Perform robust QC in a matter of minutes, not hours

Tecan’s innovative reagent core technology NuQuant³ and the integrated Infinite reader enable you to simultaneously measure your final libraries on a plate without unnecessary sample loss.

DreamPrep NGS is simply fast and precise

Save reagents and samples

One shaker and three thermal devices for optimal library preparation

Oxford Nanopore's Ligation Sequencing Kit XL V14 automated on the DreamPrep NGS workstation

DreamPrep NGS has been at the forefront in viral surveillance

Prevent unauthorized changes to validated protocols with the Method Approval function

1) Number of samples processed in walk-away mode is determined by the NGS protocol

2) Ring magnet plates and POGO® adapter with Spring Cushion Technology manufactured by ALPAQUA® Engineering, LLC. Beverly, USA.
2) Thermal devices (Cold Plate Liquid-Cooled, CPLC) and ODTC® manufactured by Inheco© Industrial Heating and Cooling GmbH. Martinsried, Germany.
2) BioShake®3000-T elm manufactured by QInstruments® GmbH. Jena, Germany.
2) Infinite® 200 PRO F Nano+ Reader is a product of Tecan Trading AG, Switzerland.
3) NuQuant® is a registered trademark of Tecan Group Ltd., Männedorf, Switzerland or of Tecan Genomics, Inc., Redwood City, USA.

Example methods have not been validated. Please make a copy of these methods to customize them to accommodate and validate your workflow according to your desired intended use and laboratory protocols. Tecan makes no claims regarding the performance of the example methods.

Tecan NGS library prep reagents for Illumina sequencing

Tecan has developed and optimized its own NGS library preparation reagents for a broad range of sample types. These reagents have been verified on Tecan automation platforms to give you a complete solution, from samples to readily normalized libraries.

Integrated

Qualified

Illumina qualified protocols

Tecan has collaborated with key research centers and Illumina to develop automated NGS sample preparation protocols that have been optimized, tested and sequencing verified, to ensure excellent performance in any laboratory.

TruSeq Nano DNA

The TruSeq Nano DNA Sample Preparation Kit enables efficient investigation of samples where the amount of DNA available is limited. The automated workflow for this kit on the Freedom EVO® NGS workstation includes simple bead-based size selection, and can be completed in less than a day with minimal hands-on time for up to 48 samples.

Download Application Note

TruSeq PCR Free

The TruSeq DNA PCR-Free Sample Preparation Kit enables time-saving investigation of DNA samples. The user-friendly TouchTools™ interface guides the operator through automation set-up to deliver highly reproducible, sequencing-ready DNA libraries for single read, paired-end and indexed sequencing with minimal user intervention.

Download Application Note

Nextera XT

The Nextera XT DNA Library Preparation Kit enables the effective construction of high quality libraries from PCR amplicons, plasmids and small genomes, using a protocol optimized for DNA inputs from as little as 1 ng.

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TruSeq Stranded mRNA

RNA sequencing (RNA-Seq) is a powerful method for discovering, profiling and quantifying RNA transcripts. Using Illumina next generation sequencing technology, stranded information identifies the DNA strand from which a specific RNA transcript was derived, providing increased confidence in transcript annotation and visibility into antisense regulation.

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TruSeq Stranded Total RNA

Automation of the Illumina TruSeq Stranded Total RNA protocol on the Freedom EVO NGS workstation enables the conversion of total RNA into libraries of template molecules of known strand origin with minimal user intervention. The Freedom EVO NGS workstation delivers high quality libraries, with minimal risk of cross-contamination.

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TruSeq RNA Access

The TruSeq RNA Access library preparation protocol is the ideal solution for cost-effective sequencing of formalin-fixed paraffin-embedded (FFPE) archival tissue samples. The integrated enrichment steps can accommodate low starting concentrations of DNA, and the automated workflow allows the construction of up to 48 libraries in parallel, generating high quality libraries with limited user intervention and minimal risk of cross-contamination.

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Nextera Rapid Capture

The automation-friendly workflow of the Nextera Rapid Capture protocol combined with the Freedom EVO NGS workstation provides a faster, more efficient solution for library preparation and exome enrichment. Using the automated Nextera Rapid Capture Exome protocol, sample preparation can be completed with minimal hands-on time in just a day and a half, generating sequencing data results the following day.

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TruSight® HLA v2.0 Sequencing Panel

Interest in HLA gene sequencing is growing, as it offers better determination of the HLA profile of tissue donors and recipients compared to classic techniques, such as serotypical analysis.

The Illumina TruSight HLA v2.0 Sequencing Panel is a reliable and simple assay designed to generate NGS libraries for HLA profiling. Automation of the workflow on the Freedom EVO NGS workstation allows sequencing of 11 HLA loci for up to 24 samples, minimizing the risk of cross-contamination and human errors during library preparation.

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TruSeq ® Custom Amplicon Low Input

Amplicon sequencing is a targeted method for identification and analysis of variations in specific regions of the genome. Sequencing of PCR products offers cost-effective variant identification and characterization. Automation of the TruSeq Custom Amplicon Low Input library preparation workflow on the Freedom EVO NGS workstation provides a fast and efficient solution. This setup enables generation of high quality libraries from low input samples – starting with as little as 10 ng of genomic DNA.

Verified for Illumina sequencing

Tecan has developed, tested and sequencing-verified NGS sample preparation protocols in collaboration with NGS sample preparation kit vendors, to give you time to focus on analyzing sequencing results.

Verified

NEBNext Ultra II Directional RNA

The NEBNext Ultra II Directional RNA Library Prep Kit for Illumina uses the ‘dUTP` method to produce excellent yields and high quality directional libraries even from low quality RNA. Up to 96 libraries can be prepared at a time from a broad range of input material, 10 ng - 1 µg total RNA for poly(A) mRNA enrichment, 5 ng - 1 µg for rRNA depletion.

Download Application Note

NEBNext Ultra II DNA

The NEBNext Ultra II DNA library prep workflow combines the end repair and dA-tailing steps with minimal clean-¬up to reduce sample preparation time. Up to 96 libraries can be prepared per run, and multiplexed using, for example, the NEBNext Multiplex Oligos for Illumina.

This protocol allows highly reproducible library preparation from a wide range of input DNA concentrations from 500 pg to 1 μg, as well as FFPE samples, offering flexible processing of 1 to 96 samples with minimal user intervention.

Download Application Note

SureSelect XT Target Enrichment

Agilent’s SureSelect XT Target Enrichment System provides a complete portfolio of exome kits for humans and other species, as well as custom kits for both DNA and RNA capture.

Click here for an application note describing an automated protocol for parallel processing of up to 48 samples using the SureSelect XT Target Enrichment System on the Freedom EVO NGS workstation.

Download Application Note

NimbleGen SeqCap EZ Library

Roche NimbleGen’s SeqCap EZ Library is a solution-based capture system enabling enrichment of the whole exome or custom regions of interest from DNA sequencing libraries. The SeqCap EZ protocol covers exome designs, gene panels and custom content designs, according to Roche NimbleGen specifications.

Click here for an application note describing an automated protocol for NimbleGen SeqCap EZ with KAPA™ HTP Library Preparation in combination with NimbleGen SeqCap Adapter Kits A and/or B. The protocol allows preparation of up to 96 libraries, and capture of up to 24 library pools.

Download Application Note

Co-developed

IonTorrent sequencing

Sequencing-verified, flexible protocols for Ion AmpliSeq™ library preparation, developed in collaboration with Thermo Fisher Scientific.

Ion AmpliSeq libraries and panels

The Ion AmpliSeq Library Kit 2.0 enables rapid NGS library preparation for 12-25,000-plex PCR in a single well.

Automated library preparation of up to 96 samples can be performed on the Freedom EVO NGS workstation in less than six hours using 10 ng of DNA or RNA. The TouchTools operator interface minimizes hands-on time and training requirements, guiding users through every stage of protocol selection and worktable set-up.

Download Application Note

Please read the method definitions in the bottom section.
Supplier	Kit	DreamPrep® NGS	DreamPrep® NGS Compact	Freedom EVO® NGS workstation
Tecan
DNA-Seq	Celero™ DNA-Seq	_T
	Celero™ EZ DNA-Seq	_T		_T
	Ovation® Ultralow System V2	_T
RNA-Seq	Revelo™ RNA-Seq	_T		_T
	Universal Plus Total RNA-Seq	_T
	Universal Plus™ mRNA-Seq	_T	_T	_T
Targeted enrichment	Celero™ EZ DNA-Seq and QIAseq SARSCoV- 2 Primer Panel for SARS-CoV-2 sequencing	_T
Targeted genotyping	Allegro® Targeted Genotyping V2	_T		_T

10x Genomics
RNA-Seq	Chromium Next GEM Single Cell 5’v2 Kit

Agilent
Targeted enrichment	Haloplex® HS Target Enrichment System
	SureSelect XT HS2 DNA
	SureSelectXT Target Enrichment			_T
	SureSelect® QXT Target Enrichment

Bioo Scientific
RNA-Seq	NEXTflex® Small RNA-Seq Kit v3

GenDx
HLA typing	NGSgo® HLA typing			_V

Illumina
DNA-Seq	Illumina DNA PCR-Free Prep	_V
	Illumina DNA Prep	_V		_T
	Nextera XT DNA Library Preparation Kit	_T		_V
	TruSeq DNA PCR-Free			_V
	TruSeq® Nano DNA			_V
Forensics	ForenSeq® DNA Signature Prep
HLA typing	TruSight HLA v2 Sequencing Panel			_V
RNA-Seq	COVIDSeq Test (1 plate per run)	_V
	COVIDSeq Test (2 plates per run)	_V
	Illumina Stranded mRNA Prep
	Illumina Stranded Total RNA Prep with Ribo-Zero Plus
	TruSeq RNA Exome			_V
	TruSeq Stranded mRNA			_V
	TruSeq Stranded Total RNA Library Prep (Human/Mouse/Rat)			_V
Targeted enrichment	16S Metagenomic Sequencing			_T
	AmpliSeq for Illumina On-Demand, Custom, and Community Panels
	Illumina DNA Prep with Enrichment
	Illumina DNA Prep with Exome 2.0 Plus Enrichment
	Illumina RNA Prep with Enrichment (L) Tagmentation
	Nextera DNA Exome
	TruSight Cardio
	TruSight Inherited Disease Sequencing Panel
	TruSight Oncology 500 DNA/RNA High-Throughput Kit
	TruSight Oncology 500 DNA/RNA Kit
	TruSight Oncology 500 DNA/RNA with HRD
	TruSight Rapid Capture
	TruSight® Cancer

Integrated DNA Technologies (IDT)
DNA-Seq	Lotus™ DNA Library Prep Kit
	xGen™ cfDNA & FFPE DNA Library Preparation Kit
	xGen™ NGS Hybridization Capture

Lexogen
RNA-Seq	QuantSeq 3’ mRNA-Seq V2 Library Prep Kit with UDI

MGI
DNA-Seq	MGIEasy FS DNA Library Prep
RNA-Seq	MGIEasy RNA Directional Library Prep Set

New England BioLabs (NEB)
DNA-Seq	NEBNext® Ultra™ II DNA			_V
	NEBNext® Ultra™ II FS DNA Library Prep Kit for Illumina ®
	NEBNext® Ultra™ II FS DNA PCR-free Library Prep Kit for Illumina®
RNA-Seq	NEBNext Ultra II Directional RNA Poly(A) mRNA Isolation			_V
	NEBNext Ultra II Directional RNA rRNA depletion			_V

Oxford Nanopore Technologies (ONT)
DNA-Seq	Ligation Sequencing Kit XL V14 (SQK-LSK114-XL)	_V
	Native Barcoding Kit 96 V14 (SQK-NBD114.96)	_V
RNA-Seq	Midnight kit with ARTIC method for high-throughput SARS-CoV-2 sequencing

Pacific Biosciences (PacBio)
DNA-Seq	Binding kit 3.2 and cleanup beads
	DNA shearing for library preparation	_V	_V
	HiFi prep kit 96
	Revio polymerase kit		_V
	SMRTbell prep kit 3.0		_V

QIAGEN
DNA-Seq	QIAseq® FX DNA
RNA-Seq	QIAseq FastSelect RNA Lib Kit
	QIAseq miRNA Lib Kit
	QIAseq Stranded RNA Lib Kit UDI
	QIAseq Targeted RNA Panels
	QIAseq UPXome RNA Lib Kits
Targeted enrichment	QIAseq DIRECT SARS-CoV-2
	QIAseq Targeted DNA Panels

Quantabio
DNA-Seq	sparQ DNA Library Prep Kit

Roche
DNA-Seq	KAPA HyperPrep	_V
	KAPA® HyperPlus	_V
RNA-Seq	KAPA RNA HyperPrep with RiboErase (HMR)			_T
	RNA HyperPrep with mRNA Capture			_T
Targeted enrichment	KAPA HyperCap

Thermo Fisher Scientific
DNA-Seq	Ion Xpress™
RNA-Seq	Oncomine™ Comprehensive Assay v3M
Targeted enrichment	Ion AmpliSeq® Library 2.0			_V

Twist
DNA-Seq	Library Preparation EF 2.0 and Twist Universal Adapter System
Targeted enrichment	Human Core Exome
	Twist Target Enrichment Standard Hybridization v2

Watchmaker Genomics
DNA-Seq	DNA Library Prep Kit

Method available:

Automated method developed according to the kit vendor’s published protocol. Protocol was tested using water and/or reagents with Tecan instruments.

Method qualification in progress:

Automated method developed according to the kit vendor’s published protocol. It is currently being tested with reagents and commercial samples by the vendor.

Method qualified: _V _T _C

Automated method developed according to the kit vendor’s published protocol. Method was qualified using kit vendor’s guidelines, reagents and commercial samples. Libraries prepared with these methods meet the kit vendor’s specifications and/or perform comparably to those prepared manually. Sequenced libraries were assessed either by the vendor (_V vendor qualified), by Tecan (_T Tecan qualified) or by the customer (_C customer qualified).

Method custom developed:

Automated method developed according to specific customer need. Libraries tested by the customer.

There are so many things that you have to get right to create high quality libraries for reliable next generation sequencing, so why have unnecessary complexity in your liquid handling?

Automation of NGS sample preparation on the Freedom EVO NGS workstation increases throughput and reproducibility, guiding the user through each step of protocol selection and worktable set-up with the TouchTools™ operator interface.

Freedom EVO NGS workstation

The Freedom EVO NGS workstation is equipped with innovative air displacement pipetting technology, using eight pipetting channels (1) to allow precise pipetting from 1,000 µl down to 0.5 µl. The workstation includes three Inheco CPAC devices (2) to keep reagents cool and provide optimal conditions for the enzymatic steps, an Inheco Thermoshake heated shaker (3), a 96-position Alpaqua 96S Super Magnet Plate magnetic plate separator (4) and a RoMa Arm (5) for efficient bead clean-up. In addition, the compact worktable provides storage space for up to 12 tip boxes (6), allowing longer unattended runs.

Precision: The Freedom EVO’s precision automation ensures the reproducibility necessary for high quality results, with a range of qualified sequencing-verified protocols available.
Flexibility: Don’t be constrained by batching requirements. Whether you need to process 6, 13, 19, 40 or even 96 samples, only run what you need, saving on reagents.
Simplicity: You don’t need to be an automation expert. With the simple touchscreen interface, you can get started right away, set up your runs quickly and be confident in your workflows.

NGS Sample preparation Freedom EVO with Touchtools

TouchTools operator interface

The TouchTools application starter screen lets the operator select the desired protocol with the touch of a button. Step-by-step user instructions help to avoid potential errors during worktable set-up to ensure the correct initial conditions. A selection confirmation screen then provides a summary as a final check before starting the run, making it easy for anyone in the lab to use the instrument.

Installation and support

The Freedom EVO NGS workstation is supplied with one of the standard protocols available at the time of installation, including water testing and user training. Additional protocols can be installed at any time.

Tecan Journal Articles

Off-the-shelf NGS library prep for Ion Torrent™ sequencing

[TJ 03/2015]

The Leiden University Medical Center has integrated the Freedom EVO® NGS workstation into its molecular diagnostic testing and clinical research workflows. Taking advantage of this preconfigured solution, the center was quickly able to commission the platform for routine testing, while still having the flexibility to develop new protocols and conduct research studies.

Enhancing NGS sample prep with automation

[TJ 02/2014]

The University of North Carolina (UNC) has automated its major sample preparation protocols for next generation sequencing on a Freedom EVO® workstation, enabling more efficient processing.

GeT with the NGS program

[TJ 02/2014]

The GeT genomics facility near Toulouse has been developing a series of automated NGS protocols in collaboration with Tecan – including Illumina’s TruSeq® DNA and RNA kits, as well as Bioo Scientific’s NEXTflex™ PCR-Free Modules – on two Freedom EVO® workstations, helping to improve throughput and reliability for a wide range of projects.

Sensitive and fast quantification

The Infinite® F Nano+ multimode reader offers absorbance and high sensitivity fluorescence reading modes in one compact instrument. It combines the high sensitivity of fluorescence assays and the speed provided by reading plate formats of up to 384 wells.

NGS library quantification is a crucial step for a successful sequencing run. Accurately determining the number of sequenceable molecules is highly significant for new high capacity sequencers, such as the NovaSeq system.

Tecan NuQuant technology

Tecan NuQuant® is a novel library quantification method that accurately measures molar library concentration without the need for separate fragment size analysis. This proprietary method uses a fluorescent label that is incorporated into the library molecules during library preparation. NuQuant is independent of library size, allowing library molarity to be directly measured using fluorometers, such as the Infinite F Nano+ multimode reader.

Integrated library QC in less than six minutes

NuQuant library quantification on the Infinite F Nano+ plate reader eliminates the need for additional manual qPCR or capillary electrophoresis steps, saving significant time, resources and valuable library material.

After final purification of the DNA libraries in a 96-well plate on the Fluent ® Automation Workstation, the fluorescence of the libraries and standards is measured on the Infinite plate reader. The molarity determined for each library can then be used for balanced pooling and subsequent sequencing on Illumina instruments.

Other quantification assays

Reader integration for quantification

DNA quantification can be achieved by measuring an aliquot with a fluorescent dye, such as PicoGreen® or QuantiFluor™, or by measuring the absorbance of the entire DNA sample. DNA quantification and normalization workflows typically include the following steps

Set-up of quantification assay
Determination of the DNA concentration in a reader
Calculation of a dilution scheme to achieve the target concentration for each well
Dilution of the DNA samples to the desired concentration.